Search results for "principal component analysi"
showing 10 items of 489 documents
Smoothed Spherical Truncation based on Fuzzy Membership Functions: Application to the Molecular Encoding.
2019
A novel spherical truncation method, based on fuzzy membership functions, is introduced to truncate interatomic (or interaminoacid) relations according to smoothing values computed from fuzzy membership degrees. In this method, the molecules are circumscribed into a sphere, so that the geometric centers of the molecules are the centers of the spheres. The fuzzy membership degree of each atom (or aminoacid) is computed from its distance with respect to the geometric center of the molecule, by using a fuzzy membership function. So, the smoothing value to be applied in the truncation of a relation (or interaction) is computed by averaging the fuzzy membership degrees of the atoms (or aminoacid…
Climate indices for the Baltic states from principal component analysis
2017
Abstract. We used principal component analysis (PCA) to derive climate indices that describe the main spatial features of the climate in the Baltic states (Estonia, Latvia, and Lithuania). Monthly mean temperature and total precipitation values derived from the ensemble of bias-corrected regional climate models (RCMs) were used. Principal components were derived for the years 1961–1990. The first three components describe 92 % of the variance in the initial data and were chosen as climate indices in further analysis. Spatial patterns of these indices and their correlation with the initial variables were analyzed, and it was detected (based on correlation coefficient between principal compon…
Comparison of gap-filling techniques applied to the CCI soil moisture database in Southern Europe
2021
Abstract Soil moisture (SM) is a key variable that plays an important role in land-atmosphere interactions. Monitoring SM is crucial for many applications and can help to determine the impact of climate change. Therefore, it is essential to have continuous and long-term databases for this variable. Satellite missions have contributed to this; however, the continuity of the series is compromised due to the data gaps derived by different factors, including revisit time, presence of seasonal ice or Radio Frequency Interference (RFI) contamination. In this work, the applicability of different gap-filling techniques is evaluated on the ESA Climate Change Initiative (CCI) SM combined product, whi…
An autonomous petrological database for geodynamic simulations of magmatic systems
2022
SUMMARY Self-consistent modelling of magmatic systems is challenging as the melt continuously changes its chemical composition upon crystallization, which may affect the mechanical behaviour of the system. Melt extraction and subsequent crystallization create new rocks while depleting the source region. As the chemistry of the source rocks changes locally due to melt extraction, new calculations of the stable phase assemblages are required to track the rock evolution and the accompanied change in density. As a consequence, a large number of isochemical sections of stable phase assemblages are required to study the evolution of magmatic systems in detail. As the state-of-the-art melting diag…
A new method for the identification of archaeological soils by their spectral signatures in the vis-NIR region
2020
Abstract This paper introduces a statistical method to identify spectral signatures of buried archaeological remains and distinguish them from spectra of the background soil in the visible to near infrared region. The proposed method is based on the Principal Component Analysis (PCA). The difference between an archaeological spectrum and non-archaeological soil spectra is quantified by a so-called R value. R values larger than 1 indicate that the spectrum represents an archaeological material. The method is successfully applied to samples from five study sites in Italy and Hungary with special conditions. The reflection spectra are taken in a time-efficient way with a field spectrometer. Th…
Regional provenance of dolerite prehistoric objects through mineral analysis
2016
Abstract A methodology based on the mineral analysis determination has been developed to identify the origin of dolerite stone outcrops collected to fabricate lithic objects during the Prehistoric period. The method is based on the use of inductively coupled plasma mass spectrometry (ICP-MS) to analyse rare earth elements (REE) and trace elements. Additionally a no destructive geochemical analysis based on X-ray fluorescence (XRF) was employed for major elements analysis. The aforementioned methodologies were applied to samples from different archaeological fields or natural outcrops located in the Mediterranean area of Spain, between Valencia and Alicante. Principal component analysis (PCA…
Burned bones forensic investigations employing near infrared spectroscopy
2017
The use of near infrared (NIR) spectroscopy was evaluated, by using chemometric tools, for the study of the environmental impact on burned bones. Spectra of internal and external parts of burned bones, together with sediment samples, were treated by Principal Component Analysis and cluster classification as exploratory techniques to select burned bone samples, less affected by environmental processes, to properly carry out forensic studies. Partial Least Square Discriminant Analysis was used to build a model to classify bone samples based on their burning conditions, providing an efficient and accurate method to discern calcined and carbonized bone. Additionally, Partial Least Square regres…
Survival and gene expression under different temperature and humidity regimes in ants
2017
Short term variation in environmental conditions requires individuals to adapt via changes in behavior and/or physiology. In particular variation in temperature and humidity are common, and the physiological adaptation to changes in temperature and humidity often involves alterations in gene expression, in particular that of heat-shock proteins. However, not only traits involved in the resistance to environmental stresses, but also other traits, such as immune defenses, may be influenced indirectly by changes in temperature and humidity. Here we investigated the response of the ant F. exsecta to two temperature regimes (20 degrees C & 25 degrees C), and two humidity regimes (50% & 75%), for…
Origin and distribution of desert ants across the Gibraltar Straits
2017
The creation of geographic barriers has long been suspected to contribute to the formation of new species. We investigated the phylogeography of desert ants in the western Mediterranean basin in order to elucidate their mode of diversification. These insects which have a low dispersal capacity are recently becoming important model systems in evolutionary studies. We conducted an extensive sampling of species belonging to the Cataglyphis albicans group in the Iberian Peninsula (IP) and the northern Morocco (North Africa; NA). We then combined genetic, chemical and morphological analyses. The results suggest the existence of at least three and five clades in the IP and NA, respectively, whose…
The role of the Strait of Gibraltar in shaping the genetic structure of the Mediterranean Grenadier, Coryphaenoides mediterraneus, between the Atlant…
2017
24 pages, 4 figures, 4 tables, supplementary information https://dx.doi.org/10.1371/journal.pone.0174988.-- Data Availability: The mtDNA COI sequences can be accessed at BOLD systems through the sample ID: ME-9911; ME-11972; ME-13727; GLF011. New mtDNA COI sequences can be accessed at GenBank by the accession numbers KY345206 - KY345398. GenBank accession numbers for close related species of C. mediterraneus are: Coryphaenoides striaturus - KX656427.1, KX656428.1; Coryphaenoides murray - KX656411.1, KX656410.1; Coryphaenoides carapinus - KX656382.1, KX656381.1; Coryphaenoides brevibarbis - KX656377.1, KX656376.1, KX656375.1. An alignment in fasta with all the haplotypes and respective frequ…